Autonomous synthesis robot speeds up chemical discovery


Wednesday, 14 February, 2024


Autonomous synthesis robot speeds up chemical discovery

Chemists at the University of Amsterdam (UvA) have developed an autonomous chemical synthesis robot with an integrated AI-driven machine learning unit. Dubbed ‘RoboChem’, the benchtop device can outperform a human chemist in terms of speed and accuracy while also displaying a high level of ingenuity — and could significantly accelerate chemical discovery of molecules for pharmaceutical and many other applications.

RoboChem was developed by the group of Professor Timothy Noël at the UvA’s Van ‘t Hoff Institute for Molecular Sciences. The expertise of the Noël group is in flow chemistry, a novel way of performing chemistry where a system of small, flexible tubes replaces beakers, flasks and other traditional chemistry tools.

In RoboChem, a robotic needle carefully collects starting materials and mixes these together in small volumes of just over half a millilitre. These then flow through the tubing system towards the reactor. There, the light from powerful LEDs triggers the molecular conversion by activating a photocatalyst included in the reaction mixture. The flow then continues towards an automated NMR spectrometer that identifies the transformed molecules. These data are fed back in real time to the computer that controls RoboChem.

“This is the brain behind RoboChem,” Noël said. “It processes the information using artificial intelligence. We use a machine-learning algorithm that autonomously determines which reactions to perform. It always aims for the optimal outcome and constantly refines its understanding of the chemistry.”

At the heart of RoboChem is a powerful photochemical reactor. Here the molecules are transformed according to the instructions from the AI controller. Image credit: UvA/HIMS.

RoboChem’s first results, published in the journal Science, show that it is a precise and reliable chemist that can perform a variety of reactions while producing minimal amounts of waste. Working autonomously around the clock, the system delivers results quickly and tirelessly.

“In a week, we can optimise the synthesis of about 10–20 molecules — this would take a PhD student several months,” Noël said. All of the molecules included in the Science paper were isolated and checked manually, with Noël saying the system has impressed him with its ingenuity.

“I have been working on photocatalysis for more than a decade now; still, RoboChem has shown results that I would not have been able to predict,” he said. “For instance, it has identified reactions that require only very little light. At times I had to scratch my head to fathom what it had done. You then wonder: would we have done it the same way? In retrospect, you see RoboChem’s logic. But I doubt if we would have obtained the same results ourselves. Or not as quickly, at least.”

The machine-learning algorithm decides which reactions to execute. Researchers only interact at the beginning, starting the RoboChem session. Image credit: UvA/HIMS.

The researchers also used RoboChem to replicate previous research published in four randomly selected papers. They then determined whether RoboChem produced the same — or better — results.

“In about 80% of the cases, the system produced better yields; for the other 20%, the results were similar,” Noël said. “This leaves me with no doubt that an AI-assisted approach will be beneficial to chemical discovery in the broadest possible sense.”

According to Noël, the robot not only yields the best reaction conditions, it also provides the settings for scale-up. “This means we can produce quantities that are directly relevant for suppliers to the pharmaceutical industry, for example,” he said.

A robotic needle sampler selects precise quantities of various reagents and skilfully mixes these to create a reaction solution. Image credit: UvA/HIMS.

Noël added that the relevance of RoboChem and other ‘computerised’ chemistry also lies in the generation of high-quality data, which will benefit the future use of AI. “In traditional chemical discovery only a few molecules are thoroughly researched; results are then extrapolated to seemingly similar molecules,” he explained. “RoboChem produces a complete and comprehensive dataset where all relevant parameters are obtained for each individual molecule. That provides much more insight.”

Another feature is that the system also records ‘negative’ data, in contrast to current scientific practice where most published data only reflects successful experiments.

“A failed experiment also provides relevant data, but this can only be found in the researchers’ handwritten lab notes,” Noël said. “These are not published and thus unavailable for AI-powered chemistry. RoboChem will change that, too.

“I have no doubt that if you want to make breakthroughs in chemistry with AI, you will need these kinds of robots.”

Top image caption: RoboChem is an autonomous benchtop platform for fast, accurate and around-the-clock chemical synthesis. Image credit: UvA/HIMS.

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