The microbiome helps to fight melanoma

Scientists at The Peter Doherty Institute for Infection and Immunity, in collaboration with the Peter MacCallum Cancer Centre and Monash University, say they have uncovered how the gut microbiota help the immune system fight melanoma, explaining why patients with a fibre-rich diet and balanced gut bacteria tend to respond better to cancer immunotherapies.

The team’s study, published in the journal Immunity, showed that molecules produced by gut bacteria upon digestion of dietary fibre can improve the function of cancer-fighting immune cells. The research team found that these digestive by-products influence melanoma progression by naturally boosting killer T cell function in preclinical cancer models, filling important gaps in our knowledge about how the gut microbiota regulate melanoma immunity.

“Melanoma patients undergoing immunotherapy can benefit from a fibre-rich diet and previous studies suggested that what we eat affects the immune system; however, how that works wasn’t clear,” said Dr Annabell Bachem, a Senior Research Fellow at the Doherty Institute and co-first author on the paper.

“When gut bacteria break down dietary fibre and other nutrients, they produce small molecules called metabolites. In this study, we found that the process involved in the production of short-chain fatty acids, a type of metabolite, plays a key role in how cancer-fighting T cells function.

“These metabolites act like messengers and fuel — directing how T cells function and powering them with the necessary energy so that they can fight cancer more effectively.”

Senior author Professor Sammy Bedoui, Laboratory Head at the Doherty Institute, said the work highlights the importance of discovery research.

“This project began by us asking very fundamental questions about how killer T cells function,” he said. “Once we identified how killer T cells responded to the microbiota-derived metabolites, it became obvious that resolving these fundamental questions about how T cells operate might also help understand why only some patients with melanoma respond effectively to immunotherapies.”

Together with Professor Shahneen Sandhu, a medical oncologist at Peter Mac and close collaborator of the Doherty research team, they applied their experimental findings to melanoma patients and discovered that the gut microbiome from advanced melanoma patients responding to immunotherapy also shows signs of increased short-chain fatty acid production.

“Our discovery could help explain why recent clinical studies have shown that patients with advanced melanoma who follow a high-fibre diet and have a healthy gut microbiome respond better to immunotherapy,” Bedoui said.

“T cells can become exhausted and lose the ability to properly fight cancers. Our study showed that the microbiota-derived metabolites preserve the function of T cells and thereby improve their capacity to kill melanoma cells.

“Resolving these links between diet and the killer T cell response could help improve treatment for melanoma.”

A $5 million NHMRC Synergy Grant has since been awarded to Sandhu, Bedoui, Dr Vanessa Marcelino (Doherty Institute), Professor Tony Papenfuss (WEHI), Dr Lavina Spain and Professor Grant McArthur (both Peter Mac) to address this further and test their experimental findings in clinical studies of melanoma patients.

“Collectively, our research will provide new insights into how microbial metabolites may regulate immune responses against melanoma and to identify new ways to treat melanoma patients and improve their outcomes,” Sandhu said.

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